1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttgaacctaagaaagaagataaatcacattttcaatatttggtgaagttattagctgcttattgttgcattaatcactgagttatctttttcatgcagACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCGATTG
species | Glycine max |
transcript | GLYMA08G33520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAGCATCC-TTTTTTCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTGEST: gi|46492935|gb|CN472491.1|CN472491
genomic: AACAGCATCCTTTTTTTCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTG
EST: AACAGCATCCNNNNNNNCGTGGAATCAATTGGCCTCTTATCCGCAACATG ACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTG
genomic: AACAGCATCCTTTTTTTCGTGGAATCAATTGGCCTCTTATCCGCAACATGgtaatattct ... tttcatgcagACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTG
gaagttattagctgcttattgttgcattaatcactgagttatctttttcatgcagACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCGATTG
cattaat putative branch site (score: 3)
ttatctttttc putative PPT
ttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaacctaagaaagaagataaatcacattttcaatatttggtgaagttattagctgcttattgttgcattaatcactgagttatctttttcatgcagACTCCACCTCCATTAGATGTTCCTCTTAAATTGATAGGAAACGATCCAGTGGCAAAGGATATAAAGTGGGAAGATGATGGAGTGCTAGTTAGCTCGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - aagaaaga
- - - - - - - - - - - -aatcaca
- - - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tagctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatta