1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttgagttgggaataaagaaaaggataaaataataaaataaagaactcttttaatttgaaacttgtaaaatctagttgatgaaacatcttttttgacagGCTGATAAGGTAACTGTGGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTTGCAACTTCATTCCTGCAG
species | Glycine max |
transcript | GLYMA08G32790.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGCCCTTGTTCATCGGCCTAACGAGTCTTTCTTTCTTTTTCCTCAG GCTGATAAGGTAACTGGTGGTGTATCCTATGAGATTCAACGATTCAATAGAEST: gi|19934903|gb|BQ079933.1|BQ079933
genomic: TTGTTGCCCTTGTTCATCGGCCTAACGAGTCTTTCTTTCTTTTTCCTCAGgtgtgataat ... tttttgacagGCTGATAAGGTAACTG-TGGTGTATCCTATGAGATTCAACGATTCAATAGA
EST: TTGTTGCCCTTGTTCATCGGCCTAACGAGTCTTTCTTTCTTTTTCCTCAG GCTGATAAGGTAACTG
genomic: TTGTTGCCCTTGTTCATCGGCCTAACGAGTCTTTCTTTCTTTTTCCTCAGgtgtgataat ... tttttgacagGCTGATAAGGTAACTG
actcttttaatttgaaacttgtaaaatctagttgatgaaacatcttttttgacagGCTGATAAGGTAACTGTGGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTTGCAACTTCATTCCTGCAG
catctttttt CT-rich tract
tttaatttgaaacttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgagttgggaataaagaaaaggataaaataataaaataaagaactcttttaatttgaaacttgtaaaatctagttgatgaaacatcttttttgacagGCTGATAAGGTAACTGTGGTGTATCCTATGAGATTCAACGATTCAATAGACATTGTTCTTGCAACTTCATTCCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - gttggga
- - - - - - - - aagaaaa
- - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg