1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatattctcatcttgtattcataaggttaatacaatatcaatttgcttgctatgatgatgtagtgttcggatttctttatactctagtcgtcattcttcttgttggagtatgattttttgtgtttctctcactctcaactatttctgatatacttttacttatttctgtttttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
species | Glycine max |
transcript | GLYMA08G28320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|151396331|gb|EV266208.1|EV266208
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|151409158|gb|EV278966.1|EV278966
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|298197751|gb|HO039290.1|HO039290
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACTCAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|151399665|gb|EV269536.1|EV269536
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTGCGCEST: gi|151412110|gb|EV281922.1|EV281922
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|213619549|gb|DB957250.1|DB957250
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACNAGGTTCGCEST: gi|17154077|gb|BM144010.1|BM144010
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCEST: gi|15815223|gb|BI787498.1|BI787498
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
EST: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCG TTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
genomic: GATGGCAAAATGCCCCAATGGCCCATCTGTAAAGTTTCTAGTTAGTGCCGgtaatattct ... tgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGC
caactatttctgatatacttttacttatttctgtttttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
ttctgat putative branch site (score: 3)
cttttacttatttctg putative PPT
atatacttttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattctcatcttgtattcataaggttaatacaatatcaatttgcttgctatgatgatgtagtgttcggatttctttatactctagtcgtcattcttcttgttggagtatgattttttgtgtttctctcactctcaactatttctgatatacttttacttatttctgtttttcctccactgctttccagTTCACACAATGGAGGAATTGAAGCTAACGGGAAATCACCTACAAGGTTCGCGTCCAATTTTGACATTTTCAGCAAATTTTGAAAAAGATGCACATTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG