1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgtatccttcaatttttcactacagtgtaattttctttagaaaagcttattgtgactccttttggttacttggaactgtctgaaacatcaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
species | Glycine max |
transcript | GLYMA08G27670.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGEST: gi|208081637|gb|GD882065.1|GD882065
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGEST: gi|208105287|gb|GD905516.1|GD905516
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCAGAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAGEST: gi|193640743|gb|FK587668.1|FK587668
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
EST: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAG ACACAATTCATGCTGGACCAGTTATCTGATCTT
genomic: ATCTTGAACGGCAATTGGATTCATCTCTAAAGCAAGTGAGGTCCACAAAGgtaataatgg ... caatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTT
agcttattgtgactccttttggttacttggaactgtctgaaacatcaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
atcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtatccttcaatttttcactacagtgtaattttctttagaaaagcttattgtgactccttttggttacttggaactgtctgaaacatcaatttgcagACACAATTCATGCTGGACCAGTTATCTGATCTTCAAACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tccttca
- - - - - - - - - -cactaca
- - - - - - - - - - - - - - - - - - - - -gaaaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtctg