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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaattgtcacccttaataaggcaaaataaaggatgattaaaaaaaataattatagtccccagaaaagatattgaaggtctaaattaaagtgcttagttttgatttacttgatagtctcaaaagcataatggatgtaactgtatatttgcgacttgtagGGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAG

Basic information

species Glycine max
transcript GLYMA08G24510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24510.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 3'ss of exon 4
gtactaattgtcacccttaataaggcaaaataaaggatgattaaaaaaaataattatagtccccagaaaagatattgaaggtctaaattaaagtgcttagttttgatttacttgatagtctcaaaagcataatggatgtaactgtatatttgcgacttgtagGGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAG
                    || |||   ||    |    ||  ||  ||||   | | |  |||      || | |    |||    |    ||  || ||||  ||  ||   | |  |  ||| | |  ||  ||||    | | | || |||||  |||| || ||||  ||| ||||||| ||||| || |||||||||||| | ||||| || |||||||| || |||||||| || 
-------------------gtatggctttatttctg----ttgtaagtaatacagaaattttccatgctgtatttggccattct----tgtgatgtataatttt--ttctctgacttggttataaatctttgtgcctgtataaatttgtctgtgactt--agGGTCGCTTCAAATACCAACCTGGGCAAGTAAGAGCATTTGGAATGTTAGCTGGAGGATCAGGCATTACCCCAATGTTCCAA

upper sequence: GLYMA08G24510.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 4
gtactaattgtcacccttaataaggcaaaataaaggatgattaaaaaaaataattatagtccccagaaaagatattgaaggtctaaattaaagtgcttagttttgatttacttgatagtctcaaaagcataatggatgtaactgtatatttgcgacttgtagGGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAG
                                                   || |  | |  ||  |||   |||  |  | || |       ||     |    |||| | |   |||   |  ||  ||||         |||||  ||      | ||||| || ||||  ||| |   ||||||||| ||||||||||||||| | ||||| || |||||||| |||||||||||||| 
---------------------------------------------------aaatggattttcctcaaactctatgaatcgcctcacaatttctgtaccatgcacatttgcctt-cagtt--aggaggttaata--------tgtattcttctctgatatagGGCCGATTCAAGTACCACGTTGGCCAAGTGAGGGCATTTGGAATGCTGGCTGGTGGATCAGGCATTACTCCAATGTTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttgatagtctcaaaagcataatggatgtaactgtatatttgcgacttgtagGGACGTTTCACTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGATTGCTGGGGGCTCAGGCATAACTCCAATGTTTCAG
                            atgtaac  putative branch site (score: 3)
                                   tgtatattt  TA-rich tract