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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaactaacaacttaggtcataaacaacttaatctgaagctttattaatgatcgcaacaaatatatgttaatttaactaaacttcttgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGGTTGTACGATTCAGTCAATGTCTTGTTGTCGCTTCAG

Basic information

species Glycine max
transcript GLYMA08G24160.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716122|gb|BW662320.1|BW662320
EST:     ATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAG                         TGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATG
genomic: ATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAAGTTTAAAGgtacgtaact ... tgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattaatgatcgcaacaaatatatgttaatttaactaaacttcttgtgttgtagTGTTGTCTACTTCTATCAATGTTGCCACCAGAGATTGTGGGAGAAAAGATGGAACCTGAAAGGTTGTACGATTCAGTCAATGTCTTGTTGTCGCTTCAG
                                 aactaaa  putative branch site (score: 2)
                                        cttcttgt  CT-rich tract
              aacaaatatatgttaa  TA-rich tract