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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattattcttttttatatatgaatataaatactcaaacaaacaaaactaggatgtgtaatattgatttaaatggaccttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG

Basic information

species Glycine max
transcript GLYMA08G24160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 7
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatgg----accttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||      | |    | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||| ||||| |
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactaaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTAT-CATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 4
gtattattcttttttatatatgaatataaatactcaaacaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt-----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||      ||   | | | |   | |   |  | |   ||   |     |     |    |  || | |   ||  ||| |  |     ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   |||||| |||||||| |
gtatggccacttgaaacaaaagttcacattcatcctatacaatgcattcttgtgtcatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCCATGCATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 4
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||     |||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||    |   ||||    ||||||  ||||  | ||||| ||||  ||||||||||||||||||||||||||||   || | || ||   |||||||||| |||| |
gtatggccatttcaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgtttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTCACTCTTCCCCTCTCATCTTCCTATGAATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 3'ss of exon 1
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatgg--accttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||     |||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||    | |    | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||||||||| |
gtatggccatttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01290.t01 (Vitis vinifera), 3'ss of exon 4
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG-----
||||     ||||  | | | |   |||   |  | |  |||   |  || |  |||   |       ||| ||| |  |   ||||    | || || ||||  ||||||| | ||  |||||||||||||||||||||||||||||| || | || || ||||||||||||||||| |     
gtatggacattttaaacacaagttcatattcatcctatgcaatttattcttgtgtgttggactgaatcttatatgaaattgcttcttccatgcagCTATTTGGCTTATTTGACTAGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTTTTCTTCCTATGCATCCAGGTTAA

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 5
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatgg----accttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||      | |    | |||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || ||   ||||||||||||||| |
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattgcttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 4
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||     ||||  | | |     |||   |  | |  | |   |  || |  |||   |       ||| ||| |  |   ||||    | || || ||||  ||||||| ||||  |||||||||||||||||||||||||||||| |||| || || ||||||||||||||||| |
gtatggccattttaaacacaaattcatattcatcctatgccatttattcttgtgtgttggactgaatcttatatgaaattgtttcttccatgcagCTATTTGGCTTATTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCCTCCCTTCTTTTCTTCCTATGCATCCAG

upper sequence: GLYMA08G24160.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 4
gtattattcttttttatatatgaatataaatactcaa-acaaacaaaactaggatgtgtaatattgatttaaatggaccttgctctt----gtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
||||      ||   | | | |   | |   |  | | ||||   |  || |  ||    |       ||| |||    |   ||||    ||||||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | || ||   ||||||||||||||| |
gtatggccacttgaaacacaagttcacattcatcctatacaatgcattcttgtgtgatggactgaatcttatatgatattccttcttccgtgtagATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTTTTCCCTTCTCGTCTTCCTATGCATCCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaaacaaaactaggatgtgtaatattgatttaaatggaccttgctcttgtagATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGG
                         tattgat  putative branch site (score: 3)
                                         ccttgctctt  putative PPT
                 atgtgtaatattgatt  TA-rich tract