Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttatcttttttgaggttgatttctatatcagccgggttttttccttaattatcttatctggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA

Basic information

species Glycine max
transcript GLYMA08G23930.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298198982|gb|HO042345.1|HO042345
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCAGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTC
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTGTC
EST: gi|192332023|gb|FK024539.1|FK024539
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTG
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAATGTG
EST: gi|16348403|gb|BI973998.1|BI973998
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|298178394|gb|HO024129.1|HO024129
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|16105282|gb|BI893022.1|BI893022
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|151410032|gb|EV279840.1|EV279840
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|9820141|gb|BE555651.1|BE555651
EST:     GTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|298171945|gb|HO021537.1|HO021537
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|27446142|gb|CA953265.1|CA953265
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCGAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|298196834|gb|HO041577.1|HO041577
EST:     GTATCAACGTCAAATTCCACCTCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
EST: gi|298179084|gb|HO027555.1|HO027555
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATG
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATG
EST: gi|120495849|gb|EH224016.1|EH224016
EST:     GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCA                         AGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
genomic: GTATCAACGTCAAATTCCACCCCTCCTTCTGATCCTCCAGTGCAAACTCAgtgagtttat ... ggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgatttctatatcagccgggttttttccttaattatcttatctggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA
                            ccttaat  putative branch site (score: 4)
                      ttttttccttaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtttatcttttttgaggttgatttctatatcagccgggttttttccttaattatcttatctggttttgcagAGCTGCAAACAACAGTACATCTAGCACAGATGCCCCAACTACAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG