Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG

Basic information

species Glycine max
transcript GLYMA08G23750.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 4
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
      |    |  |   | ||   || |    |||   || | |  |    |    |  | | |      |   ||  | | ||  |||  |   |||||| ||||||||||| || ||||| |||||||| || ||  | |||||||||| ||| |||||||| |||||  | |||||
------gttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtatt-----aactttgtgcttaattgtttgattctacagATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 3'ss of exon 4
----------------------------------------------------------------attt-ttgagcatgcaaagagcaccattata-ctgaatatttgta---tttgtattcatatagaag-caatttggtgatgctgatccttatctttttgtaaa-----acagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
                                                                |||| ||     | ||||        | |||  ||  | ||  |    |||  |      |||||| | |||  ||  |   ||   |||  ||  | || |      ||||| ||||||||||| ||||| || || ||||| || ||||| |||||||||| | ||||||| || || |||||||| ||
gtaggtttcacagtttgttattttcatccagctatattagcctaacatatgattattgattaatatttgttatatgttcaaactaatatgtgatagttgcctgttcatcatttttaaaagagagtagaagactattgcgttgtcaagaagtttactttcgtatacatttgtgcagATCTTCAATGGTGTGTTTCTTAAGGTGAACAAGGCAACAGTAAACATGCTGCGCCGAGTTGAACCATACGTGACTTACGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: AT2G01250.1 (Arabidopsis thaliana), 3'ss of exon 4
atttttgagcatgcaaagagcaccatt-atactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
 |   |  |  ||  ||   |||  || ||    || | | |||| || | | ||          ||   |  || |     ||  | || |||||  ||||||||||||||||| || || ||||| ||||| || ||  |||||||||| | | | |||||||||||||| ||||| ||
-tcagttggtttgataatgtcacatttcatggcaaagactagtatatgaaatgattctatcagtgttgtatactgattgattttggcattgtgtaatgcagATTTTCAATGGTGTTTTCCTTAAAGTCAACAAGGCTACGATGAACATGCTTCGCCGTGTTGAGCCCTATGTCACTTACGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 3'ss of exon 2
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
   | | | ||||   ||   || | | ||   ||  | |    ||  |   ||  ||  |   |||| |||        ||| ||      || ||  || |||||| |||||||| || ||||| ||||| |||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||
--ctcttatcatg---agcttactaatctaagcaagctatcccattagaaaaatggagt-gttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 4
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaa-cagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
   | ||    | |           || |    ||  | | | ||  |  | |  |   ||     | ||  |  | |     ||  |||| |     ||||| || |||||||| ||||| ||||| ||||| || ||| |||| ||||||||||| |||||||| |||||||| || ||
-catgtggttttccttgtgttttagttgtgtcaaagttattttttccttgttaccttacagattcgtagtcgtatttaaaagaattcttttatggtttcagATATTTAATGGTGTCTTTCTGAAAGTAAACAAGGCAACAATGAATATGCTGCACAGGGTTGAGCCTTATGTGACATACGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00030.t01 (Vitis vinifera), 3'ss of exon 3
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
   | | | ||||   ||   || | | ||   ||  | |    ||  |   ||  ||  |   |||| |||        ||| ||      || ||  || |||||| |||||||| || ||||| ||||| ||| |||| ||| |||||||| ||||||| |||||||| ||||||||||||||
--ctcttatcatg---agcttactaatctaagcaagctatcccattagaaaaatggagt-gttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACGAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00060.t01 (Vitis vinifera), 3'ss of exon 3
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
   | | | ||||   ||   || | | ||   ||  | |    ||  |   ||  ||  |   |||| |||        ||| ||      || ||  || |||||| |||||||| || ||||| ||||| |||||||| ||| |||||| | ||||||| |||||||| ||||||||||||||
--ctcttatcatg---agcttactaatctaagcaagctatcccattagaaaaatggagt-gttctttgatgacataagatcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACAAGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 3'ss of exon 3
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
   | | | ||||   ||   || | | ||   ||  | |    ||  |   ||  ||  |   |||| ||||       ||| ||      || ||  || |||||| |||||||| || ||||| ||||| |||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||
--ctcttatcatg---agcttactaatctaagcaagctatcccattagaaaaatggagt-gttctttgatgatataaggtcttctcattcacttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGG

upper sequence: GLYMA08G23750.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0054g00210.t01 (Vitis vinifera), 3'ss of exon 4
atttttgagcatgcaaagagcaccattatactgaatat-ttgtatttgtattcatatagaa-gcaatttggtgatgctgatccttatc------tttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
         | |   | ||||   | ||  || |  |   | |     ||   | || ||  |   |||| |||        ||| ||      || ||  || |||||| |||||||| || ||||| ||||| |||||||| ||| |||||||| ||||||| | |||||| | ||||||||||||
-------ctcttatgatgagc-ttactaatctaagcaagctatcccattaaaaaaatggagtgttctttgatgacataagatcttctcattcgcttctttgaatacagATATTCAATGGGGTGTTTCTTAAAGTGAACAAAGCAACAATGAACATGTTGCACAGGGATGAGCCTTGTGTGACTTATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213617680|gb|DB959348.1|DB959348
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209713367|gb|BW653864.1|BW653864
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCANAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|254325882|gb|GR838763.1|GR838763
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|26046005|gb|CA783377.1|CA783377
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|254347507|gb|GR853756.1|GR853756
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|22524163|gb|BU082974.1|BU082974
EST:     GGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: GGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|151408828|gb|EV278636.1|EV278636
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|213600867|gb|DB968831.1|DB968831
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|18733245|gb|BM527500.1|BM527500
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|192299043|gb|FG992834.1|FG992834
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|298190099|gb|HO032220.1|HO032220
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCGATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|254325881|gb|GR838762.1|GR838762
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|21602015|gb|BQ612346.1|BQ612346
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|298186333|gb|HO036966.1|HO036966
EST:     CCATAGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|23727299|gb|BU761679.1|BU761679
EST:     AATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: AATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|298167477|gb|HO012740.1|HO012740
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|213614186|gb|DB956798.1|DB956798
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209705405|gb|BW678522.1|BW678522
EST:     TGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: TGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|6481697|gb|AW200968.1|AW200968
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|151404152|gb|EV273962.1|EV273962
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|192294789|gb|FG987478.1|FG987478
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|11689677|gb|BF597353.1|BF597353
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|15285859|gb|BI469750.1|BI469750
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|213604903|gb|DB956306.1|DB956306
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|192294006|gb|FG987175.1|FG987175
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|8402790|gb|BE058424.1|BE058424
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209700311|gb|BW664537.1|BW664537
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|151407554|gb|EV277369.1|EV277369
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|298169215|gb|HO020575.1|HO020575
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209705304|gb|BW667975.1|BW667975
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|192298153|gb|FG991673.1|FG991673
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|18040444|gb|BM308738.1|BM308738
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|213598951|gb|DB964526.1|DB964526
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|18041158|gb|BM309461.1|BM309461
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|8284696|gb|BE022238.1|BE022238
EST:     CCATGGACCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|193633177|gb|FK585143.1|FK585143
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|58016222|gb|CX702964.1|CX702964
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|192296243|gb|FG991569.1|FG991569
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|193467934|gb|FK431745.1|FK431745
EST:     GGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: GGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|10845839|gb|BF068880.1|BF068880
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|15664210|gb|BI701581.1|BI701581
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|193700623|gb|FK636414.1|FK636414
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209705404|gb|BW678521.1|BW678521
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|209701110|gb|BW652638.1|BW652638
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCT
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCT
EST: gi|17023798|gb|BM094832.1|BM094832
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|14258689|gb|BG881597.1|BG881597
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|298176382|gb|HO023083.1|HO023083
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|9564858|gb|BE474367.1|BE474367
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
EST: gi|151404236|gb|EV274046.1|EV274046
EST:     CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAG                         ATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG
genomic: CCATGGATCCCAAATCAAGGAAGATCCTGCAGCTGTTGCGATTGAGACAGgtattacttg ... tgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG
                           tgctgat  putative branch site (score: 3)
                                 tccttatctttttgt  CT-rich tract
                                    ttatctttttgtaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atttttgagcatgcaaagagcaccattatactgaatatttgtatttgtattcatatagaagcaatttggtgatgctgatccttatctttttgtaaaacagATTTTCAATGGTGTATTTCTCAAAGTTAACAAAGCCACAGTGAACATGCTGCACAGAGTTGAGCCCTATGTGACTTATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC