1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gggttcaatttcactttttaagcaacaattatattggatcaggcttttaactagcttttatattaattcattgggtatgctggtggaaatttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG
species | Glycine max |
transcript | GLYMA08G23440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCTTTCTGGATTCATCTGGCAAGTACAACAAGTTCTCCATCACAAAAGC TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTEST: gi|213590366|gb|DB963887.1|DB963887
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTEST: gi|192326608|gb|FK017295.1|FK017295
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTEST: gi|151405909|gb|EV275724.1|EV275724
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
EST: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGC TGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
genomic: GTCTTTCTGGATTCATCTGGCAAGCACAACAAGTTCTCCATCACAAAAGCgtaagtgtta ... ttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTT
tttaactagcttttatattaattcattgggtatgctggtggaaatttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG
tattaat putative branch site (score: 2)
tttgttt putative PPT
tagcttttatattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggttcaatttcactttttaagcaacaattatattggatcaggcttttaactagcttttatattaattcattgggtatgctggtggaaatttgtttgcagTGATACCGGCAGAAAAGTGGAAGAGCCAGAGTTGTTAGAGGCAATTCGTTTGACAATTATAAATAATCTTATTCAGTACCACCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggaa