Sequence
atgc intronic sequence ATGC exonic sequence...gtccttgaatgcaattaatccattttctattgacaaataggttattatacacctatgctctagtcttcccatttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
Basic information
species | Glycine max |
transcript | GLYMA08G23320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 3'ss of exon 3
gtccttgaatgcaattaatccattttctattgacaaataggttattatacacctatgctctagtcttccc-atttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
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--------gtgcg-ttacacaatctgcttttttaaccttcaatgtttttcttcttttgttaatttttattgatcgtttcttggtcacattgaa-----cagTTACTCTGGATCATATTGGTGGCATCATGTGCAGCTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAG
upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 3'ss of exon 3
gtccttgaatgcaattaatccattttctattgacaaataggttattatacacctatgctctagtcttcccatttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
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--------gtgcgttcatactctccttccctcgctttta---tcttatactagtttgcattt-tttacaaaatcatgatttctttc-tttgtaataacagTTACTTTGGATCATATTGGTGGCCTCATGTGCGGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAG
upper sequence: GLYMA08G23320.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 3'ss of exon 4
---gtccttgaatgcaattaatccattttctattgacaaataggttattatac-acctatgctctagtcttcccatttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
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aaactcgctcctcgtaagaagattatgt--tattcattattaacttaacatcctgtcaatgcttgtagccatctaacattctctggacacctctctg--tgcagTTACTTTGGATCATATTAGTGGCCTCATGTGCTGCCCTCATTATTCAATCCTTAGCAGCCAACCTGGGGGTAGTAACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatacacctatgctctagtcttcccatttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
tactttc CT-rich tract
atttttgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccttgaatgcaattaatccattttctattgacaaataggttattatacacctatgctctagtcttcccatttttgttttgtcacatttatactttcagTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctc