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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgagaatgtcttaaactgtcaacaatttttcaatctttcataaagaattttggtttaatatatcttcatttgcaaggaatgaatattttctgcttattataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGAT

Basic information

species Glycine max
transcript GLYMA08G22890.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207686063|gb|GD668289.1|GD668289
EST:     GCGGGCCTCAGAGAAGG                         GTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
genomic: GCGGGCCTCAGAGAAGGgtaaatgaga ... attataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
EST: gi|6964108|gb|AW432801.1|AW432801
EST:     CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGG                         GTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
genomic: CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGGgtaaatgaga ... attataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
EST: gi|14990399|gb|BI316072.1|BI316072
EST:     CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCATATAAGG                         GTTTTGGAGAAGATGGGTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
genomic: CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGGgtaaatgaga ... attataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
EST: gi|151399502|gb|EV269373.1|EV269373
EST:     CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGG                         GTTTTGGAGAAGATGGTTCCCTTGTATGGGGTGGAGGGAAATGCTGAAAGC
genomic: CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGGgtaaatgaga ... attataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGG-TGGAGGGAAATGCTGAAAGC
EST: gi|7458587|gb|AW666037.1|AW666037
EST:     CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGG                         GTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT
genomic: CATTAACCCTAAGATGTTAAATGTTGGCAAACAGCGGGCCTCAGAGAAGGgtaaatgaga ... attataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttaatatatcttcatttgcaaggaatgaatattttctgcttattataatagGTTTTGGAGAAGATGGTTCCCTTGTATGGGTGGAGGGAAATGCTGAAAGCTTGAGTTTCCAAAATGATTCAATGGATGGTTATACTATTGCATTCGGGAT
  gtttaat  putative branch site (score: 4)
                           aatgaatattttctgc  TA-rich tract