Sequence
atgc intronic sequence ATGC exonic sequencegtattttttttttttaccttaaacatttcatagttggtaattggtttgagtttttatatatacattataatccattgaaaatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTTGAGTGGTGGCAAATAGACATG
Basic information
species | Glycine max |
transcript | GLYMA08G22730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22730.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S495_13V6.1 (Physcomitrella patens), 3'ss of exon 4
------------gtattttttttttttaccttaaacatttcatagttggtaattggtttgagtttttatatatacattataatccattgaaaatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTTGAGTGGTGGCAAATAGACATG
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tgatctggaataaaatttggctctgttgccgcgatgttgattcgattgactcaccgttcataaagtattgaattagttttcttttgtctctt-cattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCTTTTGAATATTCAGCGAGGCATGGACTTGAATGGTGGCAGCTAGACCCA
upper sequence: GLYMA08G22730.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S68_264V6.1 (Physcomitrella patens), 3'ss of exon 4
--------------------------------------------------------------------------------------------------------------gtattttttttttttaccttaaacatttcatagttggtaattggtttga--gtttttatatatacattataatccattgaaaatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTTGAGTGGTGGCAAATAGACATG
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gtgagtatgggaaagctgtgtagggggaagtgtggagagtcggggtgagagatgtgtgtggatggatggtggtgcgagaacagtggtaatgatgtttttgatgtatagccgcagttgtgttgaggatctcaaattgtaagcgggagcagtgtggattggtggtggtgactgacgaggttgaggacgttggtggttgc--agGTGGGTGGCATTGCTGGCATTTGGGGAAGGGTGGCACAACAACCACCACGCATTCGAATACTCAGCTCGGCATGGCCTGGAATGGTGGCAGTTGGACCCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51338042|gb|CO981908.1|CO981908EST: GTCTGGGGGAATCAAGCATGGAACACCAGGGACTTGTCCAGAAATAATTG GTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGC
genomic: GTCTGGGGGAATCAAGCATGGAACACCAGGGACTTGTCCAGAAATAATTGgtattttttt ... aatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggtaattggtttgagtttttatatatacattataatccattgaaaatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTTGAGTGGTGGCAAATAGACATG
tttttatatatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattttttttttttaccttaaacatttcatagttggtaattggtttgagtttttatatatacattataatccattgaaaatatcttagGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTTGAGTGGTGGCAAATAGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG