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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaatcagtttcagtttttataaatggataggttgacttttttgttcgcaagttttagacagttagttctttgttttcaactccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAG

Basic information

species Glycine max
transcript GLYMA08G21840.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 3'ss of exon 4
----------gtaagaaaatcagtttcagtttttataaatggataggttgactt---ttttgttcgcaagttttagacagttagttctttg--ttttcaactccattcg------catagGTGAAGAT---CCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAG
          | |   |  | || |   |   ||||||        | |   ||   |||||    |     | |  || ||| |  | ||  |||||  |  || |         ||  ||| ||||   |||||| ||||  | ||||||||||| || || ||||| || || |||||||||||||| ||||| ||||||| |||||||
gtaagtttttgaatatacttgagatggtgaacttataatgaaggctgctcttttaatttttgccaccttacctcaagcaattattggtctggattttctgcatcacttcagcctttatttgtgcagATGATCCAGCATTGATCGTCTACACTAGTGGTACAACTGGTAAGCCAAAAGGAGTTGTTCATACTCACAACAGCATCAATTCCCAG

upper sequence: GLYMA08G21840.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 3'ss of exon 4
-------------gtaagaaaatcagtttcagtttttataaatggataggttgacttttttgttcgcaagttttagacagttagttctttgttttcaactccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAG
              | ||||  |   || ||    |||| |    |    || | ||  |      |   ||||       || || ||| ||| |     || | |   || ||| ||||| || || ||| | ||||||||||| || ||||| |||||||| ||||||||||| |||||||||||||| | ||| |||
gtaagtggaataaattagaaggtgttttacaaaccttatgataacaccctttaagttaatcaacttctttttttcttttaataattttttatttcc-----caatggtgcagATGAGGATCCTGCTCTCATTATATACACTAGTGGTACAACAGGGAAACCTAAAGGAGTTGTTCACACACACAAAAGCATTAATTCACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttcgcaagttttagacagttagttctttgttttcaactccattcgcatagGTGAAGATCCAGCACTGATTTTGTACACTAGTGGGACTACAGGTAAACCTAAGGGAGTTGTTCATACACACAAAAGCATCATTTCCCAG
                                         ctccattc  CT-rich tract
          aagtttta  TA-rich tract