1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttccacatttatcgtaatctcatttttaaccttaaaagagacatatatatgaccggtgttgtggttgtggtatgtgtgtgtgtgtgtttcacttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG
species | Glycine max |
transcript | GLYMA08G21770.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCATTCGGAAAG ACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTEST: gi|14991661|gb|BI317334.1|BI317334
genomic: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCATTCGGAAAGgtaataaaca ... acttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTT
EST: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG ACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTEST: gi|208061416|gb|GD860110.1|GD860110
genomic: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCATTCGGAAAGgtaataaaca ... acttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTT
EST: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCGTTCGGAAAG ACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTT
genomic: TAGGTGATAGAATAACAGCTCTTCACCAGCTAGTTTCCCCATTCGGAAAGgtaataaaca ... acttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTT
tatatgaccggtgttgtggttgtggtatgtgtgtgtgtgtgtttcacttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG
tttcactttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccacatttatcgtaatctcatttttaaccttaaaagagacatatatatgaccggtgttgtggttgtggtatgtgtgtgtgtgtgtttcacttttgcagACTGACACAGCTTCCGTCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
ttccaca
- - - - - - - - - - - - - - - - -aaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgtg