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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtagtttttttttttctttcatatgaatatgaattcacatgattgatctgtcttctaggtcacttatttgtattctgtccttatctgtgagttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAATTAATGGGAAATGGCTCTATTGCTAGTTCAAGTAATTCGGGTAGCTCTA

Basic information

species Glycine max
transcript GLYMA08G20830.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20830.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------tgtagtttttttttt---tctttcatatgaatatgaattcac--atgattgatctgtcttctaggtcacttatttgtattctgtccttatctgt----gagttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCT---AAATTAATGGGAAATGGCTCTATTGCTAGTTCAAGTAATTCGGGTAGCTCTA
                                                          || || |  |     ||    |    | | ||  |||    |  | |||| |    | ||     |  ||    |||   |   | ||| |    || | |||||||| ||||||||||||||||||||  |||| ||||||||| | ||||||   |||  | | |||||||||  | |||||||||||||||| ||    ||     
gtaggaagggaaaattgtcttatgaaactttaaacttcctgatttttaatttgttgacagattatgctcaacatcaccaactccagtttggtttctttaactactgatataatatatatcctgcacatgctgattacatagctgtcttttcgagaatgaaacagGTCCAAGAAAAGAAGGTCAAGAAGATTTCTGACATGAATTTGGATCCTTCAAAAGCAGTAGGAAATGGCAGTGTTGCTAGTTCAAGTAACTCAACAAGTC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207729375|gb|GD709147.1|GD709147
EST:     GTGCTT-GTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAG                         GTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATC
genomic: GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaaatg ... agttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATC
EST: gi|7690859|gb|AW758996.1|AW758996
EST:     GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAG                         GTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA
genomic: GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaaatg ... agttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA
EST: gi|7796415|gb|AW781812.1|AW781812
EST:     GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAG                         GTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA
genomic: GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaaatg ... agttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA
EST: gi|193635750|gb|FK580343.1|FK580343
EST:     TGCTTTGTTCCTTCTATCCACAAATGAATAAAACCATCAAATTTTGGAAG                         GTTCAAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGA
genomic: TGCTTTGTTCCTTCTATCCACAAATGA-TAAAACCATCAAATTTTGGAAGgtatgaaatg ... agttaaacagGTTCAA-GAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGA
EST: gi|308099093|gb|HO760934.1|HO760934
EST:     GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAG                         GTTCAAGAAAAGAGGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA
genomic: GTGCTTTGTTCCTTCTATCCACAAATGATAAAACCATCAAATTTTGGAAGgtatgaaatg ... agttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatctgtcttctaggtcacttatttgtattctgtccttatctgtgagttaaacagGTTCAAGAAAAGAAGGTCAAGAAAGTTTCAGACATGAATGTTGATCCTAAATTAATGGGAAATGGCTCTATTGCTAGTTCAAGTAATTCGGGTAGCTCTA
 gattgat  putative branch site (score: 4)
                   ttatttgtatt  TA-rich tract