Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttttgcacattgtgtagacaaccttcttaattcttatttactgccactgattttctttaaatgtcttgaaccgtatgcagCTAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAA

Basic information

species Glycine max
transcript GLYMA08G20320.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193578363|gb|FK537583.1|FK537583
EST:     GCAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATG                         CTAAATCGAGTTGAATT
genomic: GCAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGgtaggttttt ... ccgtatgcagCTAAATCGAGTTGAATT
EST: gi|208197493|gb|GD995424.1|GD995424
EST:     GTAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATG                         CTAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATC
genomic: GCAGTCGGAAATTGTCTCTCAAAACTGTTCTTATGCTTGCTGATCAGATGgtaggttttt ... ccgtatgcagCTAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaattcttatttactgccactgattttctttaaatgtcttgaaccgtatgcagCTAAATCGAGTTGAATTTGTTCATTCCAAATCATTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTAGGGAGGCGTGCAAATCAA
                   cactgat  putative branch site (score: 3)
                      tgattttctttaaat  TA-rich tract