1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgcaattgtatccttctggttaaatatggtatgaagcttacaattttgcctgatgtgatacttctgtcctctccgcatgactctttctggctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGAGCGCTGCTATGCTATGACAGTGAGACATCCTCTGATGGTTGTTGGCACT
species | Glycine max |
transcript | GLYMA08G19260.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAA ATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGAEST: gi|151407693|gb|EV277508.1|EV277508
genomic: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAAgtactgcgct ... ctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGA
EST: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAA ATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGAEST: gi|151399353|gb|EV269224.1|EV269224
genomic: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAAgtactgcgct ... ctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGA
EST: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAA ATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGA
genomic: ATTCCTGAAATGAACCTTTTAGTCACAGGGAGCTGGGACAAGACTTTGAAgtactgcgct ... ctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGA
ttgcctgatgtgatacttctgtcctctccgcatgactctttctggctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGAGCGCTGCTATGCTATGACAGTGAGACATCCTCTGATGGTTGTTGGCACT
gcctgat putative branch site (score: 4)
ctgctttt putative PPT
tttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcaattgtatccttctggttaaatatggtatgaagcttacaattttgcctgatgtgatacttctgtcctctccgcatgactctttctggctgcttttagATACTGGGACACAAGGCAGTCAAATCCAGTGCACACACAGCAACTCCCAGAGCGCTGCTATGCTATGACAGTGAGACATCCTCTGATGGTTGTTGGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - -ccttctg
- - - - - - - - - - - - - -ggtatga
- - - - - - - - - - - - - - - - - -gcttaca
- - - - - - - - - - - - - - - - - - - - - -ttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctg