1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtcctttaacggattaaactgttataaaatcttatatactcgtatataagataggttttaaaacaattattgatgttataagttatcccttctcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATGTCTGTGCGTGCCTGGTGGCCCTGCATGTTGTAGAATTTGCCCATAAACT
species | Glycine max |
transcript | GLYMA08G19110.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTTATTACATCATATAAAGGCAAAAGAGTGGTTATCTGGAGTCCATG GTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATGEST: gi|213587261|gb|DB965923.1|DB965923
genomic: GTTCTTATTACATCATATAAAGGCAAAAGAGTGGTTATCTGGAGTCCATGgtatgtcctt ... tcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATG
EST: GTTCTTATTACATCATATAAAGGCAAAAGAGTGGTTATCTGGAGTCCATG GTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATGEST: gi|151407054|gb|EV276869.1|EV276869
genomic: GTTCTTATTACATCATATAAAGGCAAAAGAGTGGTTATCTGGAGTCCATGgtatgtcctt ... tcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATG
EST: GTTCTTATTACATCATATAAAGGCAAAAGAGCGGTTATCTGGAGTCCATG GTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATG
genomic: GTTCTTATTACATCATATAAAGGCAAAAGAGTGGTTATCTGGAGTCCATGgtatgtcctt ... tcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATG
aagataggttttaaaacaattattgatgttataagttatcccttctcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATGTCTGTGCGTGCCTGGTGGCCCTGCATGTTGTAGAATTTGCCCATAAACT
tattgat putative branch site (score: 3)
ttatcccttctcgtc putative PPT
ttttaaaacaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcctttaacggattaaactgttataaaatcttatatactcgtatataagataggttttaaaacaattattgatgttataagttatcccttctcgtcaatagGTGAGTTTCTGCAGCCCCTTAGGCCTTAATGGTGAATATTGGAGAGCCATGTCTGTGCGTGCCTGGTGGCCCTGCATGTTGTAGAATTTGCCCATAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG