1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgaagcatttttctattattgttgaaataccaaacattgttgtgtgtctgtgtgtaagcgtgtttattgtatggtgtactcaaattttcccattttttaatatgtttagtgtttaattatttttcttatctttttgttgagacttgataaggttctggttgggtggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATTATGAAGTAGGAAATATGATTGCTGAAGCATTGAGCAGAGTTGGTAGAA
species | Glycine max |
transcript | GLYMA08G18760.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|193653960|gb|FK596948.1|FK596948
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|208211632|gb|GE010369.1|GE010369
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|208131083|gb|GD927190.1|GD927190
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|208120233|gb|GD916640.1|GD916640
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|120530550|gb|EH258683.1|EH258683
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|17401201|gb|BM177983.1|BM177983
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|20207910|gb|BQ133999.1|BQ133999
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|15201304|gb|BI424801.1|BI424801
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATEST: gi|192323269|gb|FK015275.1|FK015275
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
EST: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAG GTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
genomic: AGAAGACAGCGAAAGCTCTTGTATCTGAGCTTAAACAGATGTCAAAAGAGgtgaagcatt ... tggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAAT
atttttcttatctttttgttgagacttgataaggttctggttgggtggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATTATGAAGTAGGAAATATGATTGCTGAAGCATTGAGCAGAGTTGGTAGAA
acttgat putative branch site (score: 5)
ttatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagcatttttctattattgttgaaataccaaacattgttgtgtgtctgtgtgtaagcgtgtttattgtatggtgtactcaaattttcccattttttaatatgtttagtgtttaattatttttcttatctttttgttgagacttgataaggttctggttgggtggattgcagGTTGAAGATAGTGAGTTGGCAGATGTGGCAGCAGTCAGTGCAGGGAACAATTATGAAGTAGGAAATATGATTGCTGAAGCATTGAGCAGAGTTGGTAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG