1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttctggaaaccacacccctgtaatagttgcttataataaattttctgacactcttttgtgctctcccatgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG
species | Glycine max |
transcript | GLYMA08G18560.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|8827757|gb|BE211487.1|BE211487
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|11412304|gb|BF424315.1|BF424315
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|6069892|gb|AW099486.1|AW099486
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|58014741|gb|CX701483.1|CX701483
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTGGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGTTTTTCGGCTTAAATTAEST: gi|6914757|gb|AW396287.1|AW396287
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAATGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|6072271|gb|AW101658.1|AW101658
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|10233289|gb|BE802177.1|BE802177
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|207841488|gb|GD809326.1|GD809326
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: AGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGTACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|10233243|gb|BE802131.1|BE802131
genomic: AGGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|254324562|gb|GR833987.1|GR833987
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|27426337|gb|CA937857.1|CA937857
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|7639980|gb|AW734290.1|AW734290
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|31472363|gb|CD414391.1|CD414391
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|192313316|gb|FK005088.1|FK005088
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|4298166|gb|AI442722.1|AI442722
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCEST: gi|151411923|gb|EV281734.1|EV281734
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTC
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|15202918|gb|BI425686.1|BI425686
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|4303380|gb|AI443468.1|AI443468
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|193451500|gb|FK420608.1|FK420608
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: ATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|19348889|gb|BM893421.1|BM893421
genomic: ATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|192313317|gb|FK005089.1|FK005089
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|31309242|gb|CD394445.1|CD394445
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|254324561|gb|GR833986.1|GR833986
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|31305685|gb|CD390888.1|CD390888
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|4313320|gb|AI460439.1|AI460439
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTAEST: gi|6914456|gb|AW395986.1|AW395986
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
EST: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG CAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
genomic: GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAGgtacttctgg ... catgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTA
aatagttgcttataataaattttctgacactcttttgtgctctcccatgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG
ttctgac putative branch site (score: 2)
ctcttttgtgctctcc CT-rich tract
ttgcttataataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttctggaaaccacacccctgtaatagttgcttataataaattttctgacactcttttgtgctctcccatgaaacagCAAGGCGGAGAGAAGCCTAAGGGACCACTTGAGGCTCTTCGGCCTAAATTACAG
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