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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatattagctgcagattttttttctttaaagtcacagtttaagccttgcacaatttttttctgtctgatgtcatcatcattcttgtttctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT

Basic information

species Glycine max
transcript GLYMA08G18410.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18410.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 3'ss of exon 4
tttatattagctgcagattttttttctttaaagtcacagtttaagccttgcacaattttttt----ctgtctgatgtcatcatcattcttgtttctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT
     | |  ||  | ||| |  | |||| |  |    |  |  ||  |    | |    ||     | |  |  || || |      |   || || || ||||| || |||||||| ||||||||||| ||||||||||| ||||| ||||| ||
----caatgcctttaaattgtcatgcttttagtttgtggcatgtgctgttagtagtacagttgaaattttgagtagtgatgagagaaatgtgttgtacctgcagGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACAT

upper sequence: GLYMA08G18410.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 4
tttatatta---gctgcagattttttttctttaaagtc-acagttta--agccttgcacaatttttttctgtctgatgtcatcatcattcttgtttctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT
|   || |    |  |||   |  | |||| |||  ||  | ||| |  ||  ||   ||     |||   ||   | | || | |||  |||  |     | ||||| || || |||||||||||||||||| ||||||| |||||||||||||| ||
tgcgtactgcatgtggcactatcatattctctaatttctgctgttcatgagaatttggcagcacatttggatcct-tatgataaacatgattgact-----tgcagGAGGGAGTCCAACAACTTGTTCTTGGTCTGTACATTATCAGGGGTGACAACAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406500|gb|EV276315.1|EV276315
EST:     CAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAG                         GAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAAT
genomic: CAACAAATATTATTCTTGATGAGTCCCATGAACGGGTTTATTCTACAAAGgtatgatgaa ... ctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcacaatttttttctgtctgatgtcatcatcattcttgtttctaactacagGAAGGTGTGCAACAACTTGTTCTTGGTTTGTACATCATCAGGGGTGACAATAT
                                           ttctaac  putative branch site (score: 1)
                                 tcattcttgtttct  CT-rich tract
      acaattttttt  TA-rich tract