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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttttgcaagcggattgtcaatatactattaaatttttttgtagtcagttaattcatgatgcattttgtgtatttattctttgttatatttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG

Basic information

species Glycine max
transcript GLYMA08G17810.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688055|gb|BG154391.1|BG154391
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|19268728|gb|BM884984.1|BM884984
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     TCATTGTTTCCGACAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGTTTAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|207767049|gb|GD737011.1|GD737011
EST:     TACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|13311848|gb|BG405499.1|BG405499
EST:     GCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         G-CCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: GCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|298195959|gb|HO044350.1|HO044350
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|207730604|gb|GD707491.1|GD707491
EST:     AAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: AAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|15000807|gb|BI321621.1|BI321621
EST:     CATTGCTACCGAGAAGTATTTTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: CATTGCTACCGAGAAG-AAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     TCATTGCTACCGAGACGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|208056326|gb|GD853305.1|GD853305
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAGCATCAgtgagtttat ... ttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagttaattcatgatgcattttgtgtatttattctttgttatatttgattgcagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
                  attttgtgtatttatt  TA-rich tract