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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccaaaattcatactttttgaccttacaaatattacttgaagtaaattctgctcatacttcctcgtaattcccataagctacaaagtgttttgttcatatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAG

Basic information

species Glycine max
transcript GLYMA08G17010.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323031|gb|FK016762.1|FK016762
EST:     TAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
genomic: TAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
EST: gi|192294349|gb|FG987278.1|FG987278
EST:     TAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAG                         GTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT
genomic: TAAGCTTTTCTGAATGTGGAGGAATTGAAATTGAGGAGAATTGGGATAAGgtgccaaaat ... catatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcatacttcctcgtaattcccataagctacaaagtgttttgttcatatttcagGTCAAGACTGTATTTATGCCAACAGGAGTGTCTCTTACATCAGAGAGTATTGCCCCACTTGTTGCAACCCTTCCCTTAGAG
                                      ttttgttc  CT-rich tract
                                      ttttgttcatattt  TA-rich tract