1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtcaattacatccctctcaaaactattgtaaaatagcttgcttgagcagtttagctactattttagtatttagtgattttcttctgttttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTACTGGTTCAAGAGAATTCTATATTATCAGGTTGCTCTTGTTTATGTTCTT
species | Glycine max |
transcript | GLYMA08G16870.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTAEST: gi|6667043|gb|AW278502.1|AW278502
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
EST: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTAEST: gi|18040825|gb|BM309119.1|BM309119
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
EST: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAG ATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
genomic: ATTGGATGTTGCTTTGTGGGCGTATTTCATCTTGCAACCAAAGAGCCCAGgtgtgcttct ... ttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTA
gagcagtttagctactattttagtatttagtgattttcttctgttttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTACTGGTTCAAGAGAATTCTATATTATCAGGTTGCTCTTGTTTATGTTCTT
ttttcttctgttttct CT-rich tract
tattttagtatttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtcaattacatccctctcaaaactattgtaaaatagcttgcttgagcagtttagctactattttagtatttagtgattttcttctgttttcttcatagATTGAAGGTGGGTGTACATGGAATGGTTCATGCAAGGATTTCATGGGATTACTGGTTCAAGAGAATTCTATATTATCAGGTTGCTCTTGTTTATGTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA