1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagagacatcagtgcatttatgaattatgcaatggtttctaaaagaaaagacagaacagtggtgattctattgtagttaattatttctcaatgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCACCGTGGCATTGCAAATAGTGTGAGATTCCTCACAGGGCATTCAAGGAA
species | Glycine max |
transcript | GLYMA08G16030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCAAGTGAAAGTTATTCCAG GTATAAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTEST: gi|5677800|gb|AI938930.1|AI938930
genomic: TCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTAT-AACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACT
EST: GATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|209698566|gb|BW652419.1|BW652419
genomic: GATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|193399323|gb|FK361801.1|FK361801
genomic: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: AAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|209697322|gb|BW655563.1|BW655563
genomic: AAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|192326902|gb|FK015144.1|FK015144
genomic: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: GGAAATGGATTTTTTGCAACAGCAAAGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|254336247|gb|GR842426.1|GR842426
genomic: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCEST: gi|254336248|gb|GR842427.1|GR842427
genomic: GGAAATGGATTTTTTGCAACAGCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
EST: GCAAGGTATCCAAGTGAAAGTTATTCCAG GTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
genomic: GCAAGGTATCCAAGTGAAAGTTATTCCAGgtatgactcg ... atgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTC
aaaagacagaacagtggtgattctattgtagttaattatttctcaatgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCACCGTGGCATTGCAAATAGTGTGAGATTCCTCACAGGGCATTCAAGGAA
agttaat putative branch site (score: 4)
attctattgtagttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagagacatcagtgcatttatgaattatgcaatggtttctaaaagaaaagacagaacagtggtgattctattgtagttaattatttctcaatgcttgcagGTATAACTGCTGCATCTGGAATAGCAGCAGAGCTTGGAATTCCATTAACTCACCGTGGCATTGCAAATAGTGTGAGATTCCTCACAGGGCATTCAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - tgcattt
- - - - - - - - - - - - -tatgcaa
- - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtggtg