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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcattggcagttgagtagttgcttccttgtgtgcatgaaagattatagtatagagGGAATATATGACACTTTGAAGGAGTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGCCACAGGCAGTTACATTT

Basic information

species Glycine max
transcript GLYMA08G15360.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 4
--------------------------------------------------------------------gtgcattggcagttgagtagttgcttccttgtgtgcatgaaagattatagtatagagGGAATATATGACACTTTGAAGGAGTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGCCACAGGCAGTTACATTT
                                                                     |||| || ||||| || || || |||||| | |||||||||||| | || || |||||||| ||||| ||||||||||| |||| |||||| |||||||| || |||||||                                             
gtactgcacatttgaccagaaaaatcctagtcttggactctgaaattgcttgcttactcttttattctctgcaatg-cagTTAAGCAGCTGTTTCCTTATCTGCATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGCAAATCTGCTGGAGGAA---------------------------------------------

upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 4
------------------------------------------------------------------gtgcattggcagttgagtagttgcttccttgtgtgcatgaaagattatagtatagagGGAATATATGACACTTTGAAGGAGTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGCCACAGGCAGTTACATTT
                                                                   ||   || ||||| || || || || ||| | |||||||||||| | || || |||||||| ||||| ||  |||||||||||| ||| || ||||||||||| |||||||                                             
gtactgtcttgcttcctgccagacgatgtcattgtgggttgaaattgtttacttactgtttcttttctgtgatg-cagTTAAGCAGCTGTTTTCTTATATGCATGAAAGATGACAGCATTGAGGGAATCTATGAAACCCTGAAGGAGTGTGCTGTAATAAGCAAATCAGCTGGAGGAA---------------------------------------------

upper sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------------------------------------------------------------------------------------------------gtgcattggcagttgagtagttgcttccttgtgtgcatgaaagattatagtatagagGGAATATATGACACTTTGAAGGAGTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGCCACAGGCAGTTACATTT
                                                                                                                                                                    ||   || ||| ||||||| ||||||||| | |||||||||||| ||||||| || ||||||||||||||| | |||||||||| ||| || ||||| || || |||||||                                             
gtatgtttcacacgcacatgaactagattttatataacttgtccattttcctctttttcttatgtttttatttattacttttattagttgattgtggaatatgctgttaggatcctttgcttgaacagtgtacattggtctttgctaatttctgtgttctgttatgtgctgacagCTGAGTAGCTGCTTCCTTATTTGCATGAAAGATGATAGTATTGAAGGAATATATGACACTCTAAAGGAGTGTGCTGTTATCAGCAAGTCTGCTGGAGGAA---------------------------------------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattggcagttgagtagttgcttccttgtgtgcatgaaagattatagtatagagGGAATATATGACACTTTGAAGGAGTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGCCACAGGCAGTTACATTT
                                     aaagattatagtata  TA-rich tract