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...gattttcacaagttttcatttcatgcttatcaagatatgaatgcatgaaacacatctaggttctttccttcacacctttctgttgcttttaaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG
species | Glycine max |
transcript | GLYMA08G15150.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACC GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTEST: gi|207752406|gb|GD726247.1|GD726247
genomic: TTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACCgtgagaacct ... aaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT
EST: TGGCGGGGAACCTTGTTGGTGTCTTACC GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTEST: gi|20811387|gb|BQ295865.1|BQ295865
genomic: TGGCGGGGAACCTTGTTGGTGTCTTACCgtgagaacct ... aaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT
EST: TTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACC GGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT
genomic: TTGAAGGGCCTTTATTCTGGATTGGCGGGGAACCTTGTTGGTGTCTTACCgtgagaacct ... aaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCT
tgaaacacatctaggttctttccttcacacctttctgttgcttttaaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG
ttgcttttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttcacaagttttcatttcatgcttatcaagatatgaatgcatgaaacacatctaggttctttccttcacacctttctgttgcttttaaatatgcagGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAACACCTAAGTGCTTTTACTCATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - aacacat