1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atctgcatattatttgcttggttgtgcatattatgtattgtgattagtgacctagtgtgtgtgtcagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
species | Glycine max |
transcript | GLYMA08G14290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTGAAATTAAGAGTG CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAEST: gi|207751079|gb|GD725298.1|GD725298
genomic: ATCTGAAATTAAGAGTGgtattttcta ... gatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
EST: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTG CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAAEST: gi|120532498|gb|EH260631.1|EH260631
genomic: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGgtattttcta ... gatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
EST: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTG CATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
genomic: TTCTGTCCTTGGGGTTTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGgtattttcta ... gatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
agtgacctagtgtgtgtgtcagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
ttttgat putative branch site (score: 4)
tttacttttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctgcatattatttgcttggttgtgcatattatgtattgtgattagtgacctagtgtgtgtgtcagcaatatcaaagctctttacttttgatatttcagCATATCGGAAGCTTGCCCGGAATTATCATCCAGATGTCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -tgcatat
- - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgtg