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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctctcttttctcttcctctctctctgtgtaggcttgtgtacgcatgtctaaactagatatgtcacttgaacagTTTTCAAAGGACTTCACAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC

Basic information

species Glycine max
transcript GLYMA08G14050.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
gttttctctcttttctcttcctctctctctgtgtaggcttgtgtacgcatgtctaaactagatatgtcacttgaacagTTTTCAAAGGACTTCACAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC
    |   | | | | | ||  ||||||     ||   |||| |        |||  ||| ||  |||  |||  ||||| ||  ||||||| || |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||   |||||||||||| || ||||
---gttgatttctccccctctcctctctgctactaaatttgtctctcttctgcta--ctaaat--gtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC

upper sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0187g00030.t01 (Vitis vinifera), 3'ss of exon 2
gttttctctcttttctcttcctctctctctgtgtaggcttgtgtacgcatgtctaaactagatatgtcacttgaacagTTTTCAAAGGACTTCACAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC
    |   | | | | | ||  ||||||     ||   |||| |     |  |||  ||| |||  ||  |||  ||||| ||  ||||||| || |||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||||   |||||||||||| || ||||
---gttgatttctccccctctcctctctgctactaaatttgtctctcttttgcta--ctaaata--tctattgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCAAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctgtgtaggcttgtgtacgcatgtctaaactagatatgtcacttgaacagTTTTCAAAGGACTTCACAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC
                           gtctaaa  putative branch site (score: 3)
                              taaacta  TA-rich tract