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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgattaatgtatgcctctcagtttattaattacatgtagctttctagcatcctttttttttccttttctttgcataattacataagcatatatttccagGAATTTGAGAGAGATGTTCAAATTAGATGCTGCAGAGTACATGATGTCCATTTGTGGTGATTCTGGTCTAAGGGATATATCTTCACCTGGAAAAAGTGGC

Basic information

species Glycine max
transcript GLYMA08G13450.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13450.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g49510.1 (Oryza sativa), 3'ss of exon 4
---ttgattaatgtatgcctctcagtttattaattacatgtagctt-tctagcatcctttttttttccttttctttgcataattacataagcatatatttccagGAATTTGAGAGAGATGTTCAAATTAGATGCTGCAGAGTACATGATGTCCATTTGTGGTGATTCTGGTCTAAGGGATATATCTTCACCTGGAAAAAGTGGC
   ||| |||    |||| ||     ||   | ||  ||  |   | || |   | ||| |  ||| ||     |   || |   |||||   ||   | |||||||| |  |||| |||||  |  | ||||||||||| ||||||||||| || ||||||| |  | |||||| |||  | ||||||||||| |||||||||
acattgtttagaa-atgcatc--gacttgaaagttcgatcaattctgtcaattgttcttgtaattttctccatatcttattagctcataatt-tactctaccagGAATCTTCGAGAAATGTTTCATATCGATGCTGCAGATTACATGATGTCTATATGTGGTGGTGATAGTCTAAAGGAGCTTTCTTCACCTGGGAAAAGTGGC

upper sequence: GLYMA08G13450.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0034g01790.t01 (Vitis vinifera), 3'ss of exon 5
ttgattaatgtatgcctctcagtttattaatt-acatgtagctttctagcatcctttttttttccttttctttgcataattacataagcatatatttccagGAATTTGAGAGAGATGTTCAAATTAGATGCTGCAGAGTACATGATGTCCATTTGTGGTGATTCTGGTCTAAGGGATATATCTTCACCTGGAAAAAGTGGC
  || | ||   | |||   |  || ||  || |     | |||  |  | |       | |  | ||  ||||||||  | |||     | ||| | |||||| ||||| |||||||| || || ||||||||||| |||||||||||||| || ||||||  |||||| |||||  |  |||| || || |||||||||
-agagttataacttcctaataactttttgtttcattcacaccttattcacttttaaacatgtgaccttaatttgcatatattcatggaattttatcttcagGAACTTGAGGGAGATGTTTAAGTTGGATGCTGCAGATTACATGATGTCCATCTGCGGTGATGATGGTCTCAGGGAGCTTCCTTCTCCAGGGAAAAGTGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcatcctttttttttccttttctttgcataattacataagcatatatttccagGAATTTGAGAGAGATGTTCAAATTAGATGCTGCAGAGTACATGATGTCCATTTGTGGTGATTCTGGTCTAAGGGATATATCTTCACCTGGAAAAAGTGGC
                                              tatttcc  CT-rich tract
                             ataattacataagcat  TA-rich tract