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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcagaactgcctcttctcctttctctttatttgatatgattttgtacttcacatgttagtcatttatctaagacatttcttttttcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG

Basic information

species Glycine max
transcript GLYMA08G13370.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13370.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatgttcagaactgcctcttctcctttctctttatttgatatgattttgtacttcacatgttagtcatttatctaagacatttcttttttcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG
      |  |||||   | |  |   ||           |  | ||| ||| |||    ||||    ||   | ||| || | |||  || |  ||  ||| | ||| |||||| | |||||||| || || ||||| || |||||||||||  |||| ||||| || |||||| |||| ||||||||||| || |||
-----gtatgaactttgtatatttacttgaaacatccaaaatttattatgttctttgtttgttttatatagttttaatac-tgtctcattgctgttgtagGCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTCAAATACAACAAAGACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18690803|gb|BM519651.1|BM519651
EST:     TTCATGGATGATCTACCTTTGTGGG                         GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
genomic: TTCATGGATGATCTACCTTTGTGGGgtatgttcag ... tcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
EST: gi|207795135|gb|GD765390.1|GD765390
EST:     TGGATGATCTACCTTTGTGGG                         GATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG
genomic: TGGATGATCTACCTTTGTGGGgtatgttcag ... tcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtacttcacatgttagtcatttatctaagacatttcttttttcattttaagGATATGTTGGTGAGTTACATCCTGATAAGAACAGTGATAATGGCAAGCATGTCATTTATACACACAAAAACATTATTGTTAAATACAACAATGATCAG
                                  catttcttttttcatt  CT-rich tract
                                 acatttcttttttcat  TA-rich tract