Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtcattttactatatctgtcctgcctgattcttattcttttgggacaagaggttcaaggtatctatgtaatggaataaatgccttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT

Basic information

species Glycine max
transcript GLYMA08G13320.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13320.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 3'ss of exon 4
------------gtactgtcattttactatatctgtcctgcctgattcttattcttttgggacaagaggttcaaggtatctatgtaatggaataaatgccttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT
            | | || | ||| | |  |  || ||||    ||  || |||  || ||    | | |  | | |     | || | ||     | |||  |||||||||||||||| || || | ||||||| ||||||||||||  |  |||||||||| ||||| || || || ||||| |||||  | |||||||| || |||
tgtccttaaatggaagtgcc-tttcaattgaggtg-cctgttgaatcatttttcccttagg----gggatatatgatgc---tatagttgatctgtttcctatctgcagCATGAAGTGGGTTGAATTGAAGATGGGACAACTTGGGGTACTCAACAATCCTAATTACAAGATTACAGCTCTTCTGGACCATTTAGCAATGATTACAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347120|gb|BI972715.1|BI972715
EST:     CTTACTTCAGTTTATTCTGAGTATGACATTATGATATGGTCGGCAACCAG                         CATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCC
genomic: CTTACTTCAGTTTATTCTGAGTATGACATTATGATATGGTCGGCAACCAGgtactgtcat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCC
EST: gi|207847520|gb|GD820113.1|GD820113
EST:     TGATATGGTCTGCAACCAG                         CATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGGCAATCC
genomic: TGATATGGTCGGCAACCAGgtactgtcat ... cttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgggacaagaggttcaaggtatctatgtaatggaataaatgccttcctgcagCATGAAGTGGATTAAAGTCAAGATGGAACAACTTGGGGTGTTGGACAATCCTAACTACAAAATCACCGCACTTCTTGACCACATGGCAATGATCACGGTT
                                          tgccttcct  CT-rich tract
                                    aataaat  TA-rich tract