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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtttctctatattaacgtatagatctcttcatccctgtaatgataagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG

Basic information

species Glycine max
transcript GLYMA08G13300.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13300.3 (Glycine max), 3'ss of exon 5
lower sequence: Vv05s0094g01550.t01 (Vitis vinifera), 3'ss of exon 5
-------atgtttctctatattaacgtat-agatctcttcatccctgtaatgataagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG
        |   ||  |   |||    || | |  | ||||||    || |  ||  || |||       | ||   ||  |||    |   | | | | | |||||||||||| ||||| ||||| |||||||| || || |||||||||||  | ||||||||||| |||||  ||||| |   |||||| ||| | || ||||||
agggaagttacctcaattgcttatgacatgaaaaatattcatcta-atagtcttatcaatcag-------tcaagactttatttatggtagatctggctttatgacagAAAATATGGTCTCGATGACAACACTATTGATTTTATTGGTCATGCAATAGCGCTTCATAGAGATGACTGCTACCTAAATGAGCCTGCAATTGATACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208192944|gb|GD987951.1|GD987951
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|207734492|gb|GD712443.1|GD712443
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|192326977|gb|FK019239.1|FK019239
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|4283991|gb|AI440725.1|AI440725
EST:     TTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: TTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|8826330|gb|BE210060.1|BE210060
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         ACAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTGTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|24136625|gb|BU927135.1|BU927135
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
EST: gi|254321748|gb|GR825065.1|GR825065
EST:     ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGC                         AAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC
genomic: ACCCATGAAGGGATGGACTTGACAAGAGTGACTACTAAAGAGTTGATAGCgtatgtgtac ... tctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaaacaggagtattttaaagattctttttctttttttattgatctgtgacagAAAATACGGTCTTGATGATAACACTATAGACTTCATTGGTCATGCTTTGGCGCTTCATAGTGATGATCGCTACTTGGCTGAGCCAGCACTGGACACTGTG
                                       tattgat  putative branch site (score: 3)
                        ttctttttcttttttt  CT-rich tract
           agtattttaaagattc  TA-rich tract