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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttattttatgtaaaatgcaatgtatactttagcatgaaacttgaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcagATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTG

Basic information

species Glycine max
transcript GLYMA08G12360.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12360.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G080387_T01 (Zea mays), 3'ss of exon 4
gtgagttttattttatgtaaaatgcaatgtatactttagcatgaaacttgaataccgcatttaatatatatgtaataatta----atgtcctttt--cctttatatt-cagATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTG
        || |  |||    |    | | | |  | ||  ||| |  ||  ||| || || ||  |  |  ||  ||| |    ||||  ||||    |   |||| ||| || |||||||||||||| ||||||||||| ||||| || |||||  ||||  | || || ||||| ||||  |||
--------taataaatgggtgaaattaggcaaaagt-agtgtgaca--tggctacagccttcaaattgaagataggaatcataagatgttgttttgatgtccctattacagGTTCTTCAGCCCACTTGGGATGGTTCCAGTTATTGCATTGGTTGGGCTTGGCCTTTTCGAGAGAGGGTTCCCAGTG

upper sequence: GLYMA08G12360.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g01460.t01 (Vitis vinifera), 3'ss of exon 4
gtgagttttattttatgtaaaatgca-atgtatactttagcatg-aaacttgaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcagATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTG
          |   ||| ||  || | ||  ||| |  || |    | ||| | |     ||||  | | | |  ||   |  |  |  |||    |     |||| ||||| || |||||||||||||| ||||| ||  | ||||| ||||||||  | ||||||||||||||||  |||
---------gtaaaatgaaagttgtacattcataatcaagaaaatgagctttactggtagattttctttgtgttcaaatgtggacattttttggtgtc----tcagGTTTTTTAGTCCACTTGGAATGGTACCAGTGATCTCGTTAGTGGGTTTTGGGCTGTTTGACAGAGGCTTCCCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207706800|gb|GD687068.1|GD687068
EST:     AGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAG                         ATTTTTCAGCCCACTTGGAATGGTTCCA
genomic: AGCATACAAATAATTTTGGGATTTAGTCAAATATGGGCTATTTGTTCTAGgtgagtttta ... ttatattcagATTTTTCAGCCCACTTGGAATGGTTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaataccgcatttaatatatatgtaataattaatgtccttttcctttatattcagATTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCCTTAGTTGGTTTTGGATTATTTGACAGAGGCTTCCTTGTG
                           aattaat  putative branch site (score: 3)
                                   tccttttcctttatat  CT-rich tract
         atttaatatatatgta  TA-rich tract