Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttttattttattttcctgacagtattactgtttaaatgccaacctctttgtgtactatgtgcctaagttgggccctgtttaacaaatttaacaccatactcttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

Basic information

species Glycine max
transcript GLYMA08G12220.5
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g01420.t01 (Vitis vinifera), 3'ss of exon 4
gtatgactt---ttattttattttcctgacagtattactgtttaaatgccaacctctt------tgtgtactatgtgcctaagt----tgggccctgtt-taacaaatttaacaccatactc-ttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
|||||  |    |||||| || ||  ||  | ||| |    | |  |   ||  ||||      ||    || | ||   |              | ||  ||  ||| | |  || |  |  ||  | ||| ||||| || |||||||| ||||| || ||||||||||| || || |||||||| || || |||||||| |||||||||||||||||  ||||||||||||| 
gtatgcttgcaattatttcatatttttg-tattatgatgcctgatctataaagttcttgtacgatggaatctttttgttaagaaacaacaaattttattgcaaggaatcttatcccgtggttgtttgtttcttagGGCTTGCCACCTTGCAAAGCAAGCTTTTGATGAAGCTATTTCAGAGTTGGACACCCTTAGCGAGGAATCTTACAAAGACAGCACTTTAATTATGCAGCTC

upper sequence: GLYMA08G12220.5 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g01240.t01 (Vitis vinifera), 3'ss of exon 4
gtatgacttttattttattttcctgacagtattactgtttaaatgccaacctctttgtgtactatgtgcctaagttgggccctgtttaacaaatttaacaccatactcttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
     | |  |||  || | | | || |   || ||||   |||     | | |||||||  | ||    |  ||      |  ||| | |   || |||   ||    | || || ||||||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||||||||  |||||||||||||| || |||||  | |||||||| |||
---gtattcctatcgtaatcttcagagaaagtt-ctgt---aatagtcccttttttgtgtcttttgattttttgt------ccatttgaaactgtttacatggtaa--cttatttcccagGGCCTGCCACCTCGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAGTTGGATACTCTGAATGAGGAGTCTTACAAGGATAGCACATTGATTATGCAACTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208108598|gb|GD904846.1|GD904846
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCCCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|209698245|gb|BW667548.1|BW667548
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208214669|gb|GE011586.1|GE011586
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208068110|gb|GD861872.1|GD861872
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208125948|gb|GD921636.1|GD921636
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208326916|gb|GE123664.1|GE123664
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208103386|gb|GD901249.1|GD901249
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208261342|gb|GE058250.1|GE058250
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208278102|gb|GE073989.1|GE073989
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208031591|gb|GD831729.1|GD831729
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGC
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGC
EST: gi|209698244|gb|BW667547.1|BW667547
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATC
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATC
EST: gi|207683578|gb|GD664545.1|GD664545
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207712934|gb|GD692886.1|GD692886
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208292452|gb|GE091124.1|GE091124
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193551629|gb|FK508512.1|FK508512
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|21677259|gb|BQ629610.1|BQ629610
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207796679|gb|GD768405.1|GD768405
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTT-GAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193455595|gb|FK420426.1|FK420426
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208186969|gb|GD985069.1|GD985069
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTT
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTT
EST: gi|193475923|gb|FK441234.1|FK441234
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208041198|gb|GD842641.1|GD842641
EST:     CTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGG
genomic: CTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCC-TGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGG
EST: gi|207730991|gb|GD706506.1|GD706506
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTT
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTT
EST: gi|207728845|gb|GD708267.1|GD708267
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207782545|gb|GD754998.1|GD754998
EST:     CTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCCTTTGATGAAGCCATCTCTGAGTTGGA
genomic: CTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207842528|gb|GD815920.1|GD815920
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|15201076|gb|BI424680.1|BI424680
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCT
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCT
EST: gi|37994791|gb|CF806380.1|CF806380
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208181514|gb|GD975033.1|GD975033
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208066141|gb|GD865282.1|GD865282
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208138600|gb|GD940734.1|GD940734
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193595012|gb|FK547263.1|FK547263
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|163921292|gb|EH039740.1|EH039740
EST:     CTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: CTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208221859|gb|GE016881.1|GE016881
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193340894|gb|FK307171.1|FK307171
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|10237538|gb|BE806426.1|BE806426
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208046657|gb|GD849493.1|GD849493
EST:     CTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: CTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207797068|gb|GD770348.1|GD770348
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208156092|gb|GD952790.1|GD952790
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193560672|gb|FK521589.1|FK521589
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193369370|gb|FK336632.1|FK336632
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208135034|gb|GD926667.1|GD926667
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAA
EST: gi|151393532|gb|EV263407.1|EV263407
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAA
EST: gi|208269293|gb|GE066045.1|GE066045
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208041805|gb|GD843521.1|GD843521
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAATTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208046897|gb|GD846458.1|GD846458
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208228251|gb|GE021599.1|GE021599
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGG
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGG
EST: gi|31305638|gb|CD390841.1|CD390841
EST:     TTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: TTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208079854|gb|GD874110.1|GD874110
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193487227|gb|FK451802.1|FK451802
EST:     TTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: TTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193514556|gb|FK467988.1|FK467988
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193513462|gb|FK467776.1|FK467776
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193588972|gb|FK541014.1|FK541014
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193359304|gb|FK327525.1|FK327525
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTTGATGAAGCAATCTCTGAGTTGG
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCA-TTTGATGAAGCCATCTCTGAGTTGG
EST: gi|192305213|gb|FG993965.1|FG993965
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208171604|gb|GD967143.1|GD967143
EST:     CTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: CTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193609622|gb|FK564430.1|FK564430
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207797356|gb|GD769880.1|GD769880
EST:     TCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: TCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|192297914|gb|FG988370.1|FG988370
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAA
EST: gi|207806808|gb|GD778389.1|GD778389
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|208117202|gb|GD916338.1|GD916338
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|193401174|gb|FK370145.1|FK370145
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAATCTCTGAGTTGGA
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGA
EST: gi|207751203|gb|GD726206.1|GD726206
EST:     GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAG                         GGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCAAATCTCTGAGTTGG
genomic: GCTTTGAACTTCTCTGTCTTTTATTATGAAATTTTGAACTCTCCTGAAAGgtatgacttt ... catatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCA-TCTCTGAGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcctaagttgggccctgtttaacaaatttaacaccatactcttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT
                           atttaac  putative branch site (score: 3)
                                      tactcttc  putative PPT
                 tgtttaacaaatttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgacttttattttattttcctgacagtattactgtttaaatgccaacctctttgtgtactatgtgcctaagttgggccctgtttaacaaatttaacaccatactcttcatatctcagGGCCTGTCACCTTGCTAAGCAGGCATTTGATGAAGCCATCTCTGAGTTGGATACTCTGAGCGAGGAGTCTTACAAAGACAGCACCCTAATTATGCAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT