Sequence
atgc intronic sequence ATGC exonic sequence...tgtaaattttagtacagtttgatactaaaactataatagtaaaatttataataaactagaaaatatactggatcttgtgttttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g40140.1 (Oryza sativa), 3'ss of exon 3
tgtaaattttagtacagtttgatactaaaactataatagtaaaatttataataaactagaaaatatactggatcttgtgttttcttact--atttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
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-attgaggattgcacagtcctgtagtttg-ttatgtaaattggactactgcatcctcagcttgagatctggttccctttttttcctatttaaatcatgtcagACATTGCTGGGCTTCAAAATGAAGATGGATCATTTTCTGGTGATATTTGGGGTGAAGTGGACACTAG
upper sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G12210.2 (Arabidopsis thaliana), 3'ss of exon 4
-----------------------------------------------------------tgtaaattttagtacagtttgatactaaaactataatagtaaa-atttataataaactagaaaatatactggatcttgtgttttcttactattta---tgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
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gtatccttttgcacttagctttttgtcaatgtcactaactcgttcttcttcacaaatagtcatggtggaactttcatatgttaattaatcaatgatgttaaacaagaaggaaaaaccctgccttatagtagatattattatgttttcctatatacaatattagATGTTGCTAAGTTGCAGAATGAAGATGGATCCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAG
upper sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G12070.1 (Arabidopsis thaliana), 3'ss of exon 3
tgtaaatttta---gtacagtttgatactaaaactataatag-taaaatttataataaactagaaaatatactggatcttgtgttttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
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-gtatcctttacgcattcagcttcttgtcactgtgaaaataaataaactcggtaattcgtttgttg-tagatacaattatgctttttctaaatgcaaaaactagATATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCAGGAGATATATGGGGCGAAGTAGATACAAG
upper sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 3'ss of exon 4
tgtaaattttagtacagtttgatactaaaactat-aatagtaaaatttataataaactagaaaa--tatactggatcttgtgttttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
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---atggtctgacaaatttatatgttggcaaaattggaaatttaaattgcagtaaaacagggtagcttcagtcatttttagtttttcttgatccttgagtcagATATTGCTGGGCTGCAGAATGTAGATGGGTCCTTTTCAGGTGACATGTGGGGTGAAATTGATACACG
upper sequence: GLYMA08G11710.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 3'ss of exon 4
tgtaaattttagta--cagtttgatactaaaactataatagtaaaatttataataaactagaaaatatactggatc-ttgtgtt-ttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
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---aggtctaagaaatttatatgttggtaaaattg-aaaattttggtttgcaatgtaaaacagggtaatttcagtcattttgttgttcttgacccttgagttagATATTGCGGGGCTGCAGAATGAAGATGGGTCATTTTCAGGTGACATGTGGGGCGAAATTGATACGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151397834|gb|EV267707.1|EV267707EST: GGCTCTCTTTGATAAGCTGAATGTTATTGATGTAGATAAGGTCACAAGTT ACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGG
genomic: GGCTCTCTTTGATAAGCTGAATGTTATTGATGTAGATAAGGTCACAAGTTgtatccttac ... tttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGG
EST:
gi|151410609|gb|EV280424.1|EV280424EST: GGCTCTCTTCGATAAGCTGAATGTTATTGATGTAGATAAGGTCACAAGTT ACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGG
genomic: GGCTCTCTTTGATAAGCTGAATGTTATTGATGTAGATAAGGTCACAAGTTgtatccttac ... tttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttataataaactagaaaatatactggatcttgtgttttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
tttcttact putative branch site
ttttcttactattt CT-rich tract
ataaactagaaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaaattttagtacagtttgatactaaaactataatagtaaaatttataataaactagaaaatatactggatcttgtgttttcttactatttatgtcagACATTGTCAGCCTGCAAAATGAAGATGGATCCTTTTCAGGGGATATGTGGGGTGAAGTTGATACGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atactgg