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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctttctgtctcatttcgtcccatctttctaatttctatcactttgcagttaattgctattgcttatttccactaaaagaacatgagggaaaagaaggaaagggtatattgtctttgatatggaatgttgttgcatttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAG

Basic information

species Glycine max
transcript GLYMA08G10990.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525286|gb|BU084097.1|BU084097
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|5606926|gb|AI901024.1|AI901024
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|7796482|gb|AW781879.1|AW781879
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATAT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATAT
EST: gi|20811540|gb|BQ296018.1|BQ296018
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|21888824|gb|BQ742037.1|BQ742037
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
EST: gi|6481967|gb|AW201238.1|AW201238
EST:     AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAG                         GTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT
genomic: AATATGTATCTGTAAATATTGGGCCCATTCAAGTTGTTTCTAGTGAACAGgtctttctgt ... catttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaagaaggaaagggtatattgtctttgatatggaatgttgttgcatttttcagGTCCAAGCTGTATATAATGCCATGAGGACAGACAACCGGGTGAAATATTTTTTATAATCTGTCACATTGTTTTGTAGAGAACACCACGATTGCAAG
                        ctttgat  putative branch site (score: 5)
                                             catttttc  putative PPT
                tatattgt  TA-rich tract