1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatgaattagcggttgaaaattatgacatggtctaggaaaatgtcacatcattttaacaagtccataatggactgttcttggaatctatccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATC
species | Glycine max |
transcript | GLYMA08G09910.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAG GATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGEST: gi|254331757|gb|GR843607.1|GR843607
genomic: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGgttagttaca ... ccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTG
EST: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAG GATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGEST: gi|12690302|gb|BG156638.1|BG156638
genomic: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGgttagttaca ... ccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTG
EST: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAG GATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGEST: gi|213603082|gb|DB960401.1|DB960401
genomic: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGgttagttaca ... ccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTG
EST: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAG GATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTG
genomic: ACTGGGAAGGCGTGCTTCCTCGCCTAGCTTACGTTTCAAAACTCTTGAAGgttagttaca ... ccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTG
cacatcattttaacaagtccataatggactgttcttggaatctatccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATC
ttttaac putative branch site (score: 2)
tctatccttct putative PPT
attttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgaattagcggttgaaaattatgacatggtctaggaaaatgtcacatcattttaacaagtccataatggactgttcttggaatctatccttctgtagGATGTTGATTCAGCTTTGGCTCAATCAAAAGCAAAATGGAAGATGGTGGTGGGTCATCATACCATCAATAGTGCTGGGCATCATGGTAGCACCGAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA