1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taaagttcaaatacctacctctctagtggttccattattttatcatttgtgcatctatgttcattttctaattagtttatatctatcttcaaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCCAAGCAAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTGGAA
species | Glycine max |
transcript | GLYMA08G08690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|10253750|gb|BE821516.1|BE821516
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|31470217|gb|CD412185.1|CD412185
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|31472558|gb|CD414586.1|CD414586
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|12689998|gb|BG156334.1|BG156334
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTTGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCEST: gi|213593322|gb|DB975401.1|DB975401
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGC
EST: CGA-ATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192303536|gb|FG998602.1|FG998602
genomic: C-ACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192326943|gb|FK019220.1|FK019220
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|16106170|gb|BI893910.1|BI893910
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192317900|gb|FK009436.1|FK009436
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|7028191|gb|AW457974.1|AW457974
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|58018381|gb|CX705123.1|CX705123
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192317899|gb|FK009435.1|FK009435
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAG-TTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192326357|gb|FK015889.1|FK015889
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CACATGATACATACGTTTATTTCATGGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|193593562|gb|FK546654.1|FK546654
genomic: CACATGATACATACGTTTATTTCATGG-ATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: AAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|298188986|gb|HO035711.1|HO035711
genomic: AAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|6719669|gb|AW307316.1|AW307316
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAEST: gi|192294009|gb|FG987178.1|FG987178
genomic: CATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
EST: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAG AGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
genomic: CCACATGATACATACGTTTATTTCATGGATCTTTTGGCAAAGACTGTCAGgtaataattg ... aaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAA
tttgtgcatctatgttcattttctaattagtttatatctatcttcaaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCCAAGCAAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTGGAA
ttctaat putative branch site (score: 2)
tatgttcattttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaagttcaaatacctacctctctagtggttccattattttatcatttgtgcatctatgttcattttctaattagtttatatctatcttcaaacattcagAGATGAAATAGCAGGTTGCAGTGAGAAGGCCTATGACTATCTTTCAATTAAGGATGCCAAGCAAATGTTGCTGTTCTCCTCAGACCAGGAACTCCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - -cctctct
- - - - - - - - - - - - - tggttcc
- - - - - - - - - - - - - - - - - - - - - - -tttgtgc