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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttgatgttgaattctattttaaattgtttttctgttgaaatgttttcattactcttatggtatatttttccatacagTTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG

Basic information

species Glycine max
transcript GLYMA08G08280.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08280.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0055g00330.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgtttgatgttgaattctattttaaattgtttttctg--------ttgaaatgttttcattactcttatggt---atatttttccatac---agTTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG
||   |||| || |   || |  ||    || ||||| ||        ||||||| || |||   ||  ||||||   || ||||| | ||    ||||||||| | | ||||||| |||||||| |||||| ||||| ||||| |||  |||||| ||  ||||||||||||  || | | |||||
gtaactttgctgctctgttattattctttttatttttttgacgtgtatttgaaatattctcacc-cttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16346059|gb|BI971654.1|BI971654
EST:     GTATGGCTGAGACATTGGCTCAGGGTCCACCTCGCTCTCACTCACCACAA                         TTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGG
genomic: GTATGGCTGAGACATTGGCTCAGGGTCCACCTCGCTCTCACTCACCACAAgtgtgtttga ... ttccatacagTTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttttctgttgaaatgttttcattactcttatggtatatttttccatacagTTATCTGCTAGTACTCAAAAGCTTGAAGCGTTGGCCCTTAAGCAATCCAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG
                                        tatttttcc  CT-rich tract
                                ttatggtatattttt  TA-rich tract