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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatattcaggtcatttatgtgtcatttagtatgcgtacatcctaactcgtccaacaaattcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG

Basic information

species Glycine max
transcript GLYMA08G07960.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410591|gb|EV280406.1|EV280406
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298199306|gb|HO042669.1|HO042669
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|24135848|gb|BU926358.1|BU926358
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298184831|gb|HO030044.1|HO030044
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|192328547|gb|FK023551.1|FK023551
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298167316|gb|HO010755.1|HO010755
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|254330221|gb|GR839774.1|GR839774
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAT                         GTTATGAGGAAAAGTTCTATTTTAATCCAG-TGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298164922|gb|HO010919.1|HO010919
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGGTGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298167948|gb|HO013211.1|HO013211
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATT
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATT
EST: gi|22541663|gb|BU091506.1|BU091506
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|192328548|gb|FK023552.1|FK023552
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298178170|gb|HO023905.1|HO023905
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
EST: gi|298187812|gb|HO031769.1|HO031769
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTC
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgtgtcatttagtatgcgtacatcctaactcgtccaacaaattcccctacagGTTATGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTCAAG
                         tcctaac  putative branch site (score: 1)
                                            ttcccctac  putative PPT
         atttagtat  TA-rich tract