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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatcacgagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttgaaataccattttccatttacaagagggttgaattactgaattttgtgcagGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC

Basic information

species Glycine max
transcript GLYMA08G07780.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07780.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g00530.t01 (Vitis vinifera), 3'ss of exon 6
gtacatcacgagtgatctgatctatgtagtgaaatgttgcttgaaattaactttatttaatttttttgaaataccattttccatttacaagagg-gttgaattactgaattttg-tgcagGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC
|||| | |   || |  | || |||  | ||||   |    || |  |   ||| ||   || ||     | | ||||   |      | | || |   || |  ||| | | | || ||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
gtacgttatt-gtcaagttatgtattaaatgaatgttcttctggatgtggatttctt--gttcttccaggagatcattgaactgaagtatgtggagcctaactgttgagtctcggtgtagGACATGGAATACTACAATAAATTGGAAGACCCAACTGATGAGGAAAATGACATGTTGGATCTGGCTTTTGGGCTTACAGAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaaataccattttccatttacaagagggttgaattactgaattttgtgcagGACTTGGAACAATACAATAAATTGGAAGATCCAACTGATGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAAC
                                   aattactgaatttt  TA-rich tract