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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttactttcttttgagagaactacattaacagtcattttttttgttgatatgtggtaagttatattccatttatgtgcctcaaatgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAG

Basic information

species Glycine max
transcript GLYMA08G07670.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163926925|gb|EH038506.1|EH038506
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTGTTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
EST: gi|192307419|gb|FK000761.1|FK000761
EST:     NNNCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAG                         GCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT
genomic: TTTCTACTTATACATTACTTGTCTTGTTCTGGGCTGAGATATATCACCAGgtatgtttac ... tgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttgatatgtggtaagttatattccatttatgtgcctcaaatgtgtttcagGCCAGAAGTGAACCGGCACAGAAACTTAGGCCATCTTATTTTATTATCAATGGTTTTATTTACTTGATACAG
   tgttgat  putative branch site (score: 4)
                    ttatattccatttat  TA-rich tract