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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatagtatactcaaatcttattaatgaaattggtaaatttacacgtggagaacattgaatggaataagtttactttgatttcttcgtattttcttaaaaacaactcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG

Basic information

species Glycine max
transcript GLYMA08G06620.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06620.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0361g00050.t01 (Vitis vinifera), 3'ss of exon 2
gtatatagtatac-tcaaatctt---attaatgaaattggtaaatttacacgtggagaacattgaatggaataagtttactttgatttcttcgtattttcttaaaaacaactcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG
|||| | || | | |   || ||      | |  || ||   ||   ||  |  ||     | ||||||| |    ||    || ||  |  || |   ||         ||   | |||||  ||||  |  |  | ||||| ||||||||||||| ||| |||||| ||||||| || ||||||||||  
gtatgtggttttcatttgattttccagccagtagaagtgtagaaacaacttgcagaatttttggaatggactccactttacctgtttattgtgtttcccct---------cttcatacagGCAGCTCCTTCCATACTCCACCGCGACATCAAATCTTCCAACATACTGCTGGACCAATCCATGAGAGCCAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193465002|gb|FK432803.1|FK432803
EST:     TTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGG                         GCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTG
genomic: TTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGGgtatatagta ... ctcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTG
EST: gi|8283551|gb|BE021110.1|BE021110
EST:     TTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGG                         GCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTG
genomic: TTAGCATAGCGCTAGATGTTGCAAGAGGACTGGAATATCTACATCATGGGgtatatagta ... ctcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggaataagtttactttgatttcttcgtattttcttaaaaacaactcattgcagGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAATATACTGTTGGACCAGTCTATGAGAGCCAAG
              ctttgat  putative branch site (score: 5)
                            tattttcttaaaaaca  TA-rich tract