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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgcaaaattgaagtaaattgttacgttgttttctgtttttaaggtgtgtttaaaggattgaatataatttatgttggttttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATCTATCACTTTCAGTGTATAAAACAATGGGCTGCACAAAAAAATTTCTGCC

Basic information

species Glycine max
transcript GLYMA08G05410.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8285629|gb|BE023188.1|BE023188
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
EST: gi|10842876|gb|BF066237.1|BF066237
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
EST: gi|21888432|gb|BQ741645.1|BQ741645
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
EST: gi|26057103|gb|CA800017.1|CA800017
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
EST: gi|23734949|gb|BU765733.1|BU765733
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
EST: gi|18039936|gb|BM308230.1|BM308230
EST:     GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAG                         GAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC
genomic: GGGATGATACATCAAAGCACCAAGTAGATAAAGAGTGCAGCATTTGTCAGgtaagtttgc ... ttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttaaggtgtgtttaaaggattgaatataatttatgttggttttgtgttcagGAGGAGTATGAAGCAGGAAATGAGTTGGGGAGGCTAAATTGTGAACACATCTATCACTTTCAGTGTATAAAACAATGGGCTGCACAAAAAAATTTCTGCC
              tttaaaggattgaata  TA-rich tract