1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tggtgttcccttatcccttcccattcccatgctcgttttctgttgtgcttcccttgcctcttttactcaccataattcgttttcttgtctgcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
species | Glycine max |
transcript | GLYMA08G05280.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG CTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAGEST: gi|192293911|gb|FG986120.1|FG986120
genomic: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatat ... gcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
EST: TCCGAAAATCTCACTTTTAAAGCCAATGCTCAG CTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAGEST: gi|120533228|gb|EH261361.1|EH261361
genomic: TCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatat ... gcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
EST: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG CTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
genomic: GAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAGgtatgtatat ... gcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
tgcttcccttgcctcttttactcaccataattcgttttcttgtctgcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
tactcac putative branch site (score: 1)
ttttcttgtctgctt putative PPT
ataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgttcccttatcccttcccattcccatgctcgttttctgttgtgcttcccttgcctcttttactcaccataattcgttttcttgtctgcttgtacagCTCACAAATGAGCCGCATATGTCTCATGCGATGATCAACTTTGATTACAAG
- -tgttccc
- - - - - - -tcccttc
- - - - - - - - - - -cattccc
- - - - - - - - - - - - - - - - - - - tctgttg