1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattattactttgttcttctactttgaatggtgattcccatgagaataaaatgatgaaggggactgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGG
species | Glycine max |
transcript | GLYMA08G05100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTTGCGCGGCAAGAG ATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTEST: gi|24205768|gb|BU965021.1|BU965021
genomic: TAAGCTTGCGCGGCAAGAGgtattattac ... tttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCT
EST: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAG ATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTEST: gi|208135029|gb|GD928790.1|GD928790
genomic: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAGgtattattac ... tttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCT
EST: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAG ATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTEST: gi|207794477|gb|GD764788.1|GD764788
genomic: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAGgtattattac ... tttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCT
EST: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAG ATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCT
genomic: AGGCCATTCTTGCTCCTCTGGAGGCTGAACTTAAGCTTGCGCGGCAAGAGgtattattac ... tttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCT
gctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGG
agctgac putative branch site (score: 3)
tttgtttc putative PPT
attattttcttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattattactttgttcttctactttgaatggtgattcccatgagaataaaatgatgaaggggactgaagctgacttgtcataggtgatttatgtcattattttcttcaatttgtttcgaacagATAGCAAAACTTCAAGATGATAACAAAGCTTTAGACCGTCTCACCAAATCTAAAGAAGCAGCACTTATTGAAGCTGAGAAGACTGTACAGATTGCCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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