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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttccatgtctgtaacagttcttgtttttagaatataattttctatttgctcctatctgatgtcaaaattaaattcttgttgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG

Basic information

species Glycine max
transcript GLYMA08G05030.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269563|gb|BM885819.1|BM885819
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|13312371|gb|BG406022.1|BG406022
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|192296041|gb|FG993404.1|FG993404
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|37994740|gb|CF806346.1|CF806346
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|192325065|gb|FK016176.1|FK016176
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGTCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|15816027|gb|BI788302.1|BI788302
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|254326846|gb|GR836455.1|GR836455
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|209716428|gb|BW653869.1|BW653869
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|16996631|gb|BM086003.1|BM086003
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|209712046|gb|BW674191.1|BW674191
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|14125023|gb|BG789461.1|BG789461
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|192309316|gb|FK000524.1|FK000524
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|254313714|gb|GR831343.1|GR831343
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|298172847|gb|HO019831.1|HO019831
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|17153552|gb|BM143485.1|BM143485
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|4304277|gb|AI443596.1|AI443596
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|213604953|gb|DB956328.1|DB956328
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|192330755|gb|FK022018.1|FK022018
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|24205916|gb|BU965169.1|BU965169
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|213599556|gb|DB968353.1|DB968353
EST:     CCCCAAATTGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
EST: gi|23727320|gb|BU761687.1|BU761687
EST:     CCCCAAATCGAAAGTGGTGACAAAA                         TTATCATGCCTCCATCAGCCCTTGACCGTCTAG
genomic: CCCCAAATTGAAAGTGGTGACAAAAgtaagtttcc ... tgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttctatttgctcctatctgatgtcaaaattaaattcttgttgttctccagTTATCATGCCTCCATCAGCCCTTGACCGTCTAG
                   atctgat  putative branch site (score: 4)
                                      ttcttgttgttctcc  putative PPT
                             aaaattaaattcttgt  TA-rich tract