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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattctgtgagttcatcacttaagttattttctctgttcattgagtaattgtgttgctttccttccactgttattactcactctgggttagtgtttgatatcctgtgttgatcttacctttttttggtcccaagatagATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG

Basic information

species Glycine max
transcript GLYMA08G04870.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04870.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G33760.1 (Arabidopsis thaliana), 3'ss of exon 4
gtactattctgtgagttcatcacttaagttattttctctgttcattgagtaattgtgttgctttccttccactgt-tattactcactctgggttagtgtttgatatcctgtgttgatcttacctttttttggtcccaagatagATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG
                                             || ||   |    |  ||    || | | | ||||  ||| | | ||  | |      | |    ||||| |||    || |||  |||       ||||||||||||| ||||| || ||||| || |||||||| || || |||||| | ||||| |||||||| |||
--------------------------------------------gtgtgttcctactctatttgaaatctaatttatatttttcagttttggccatttcccagtttttcatgttggtctg---ttgtttatgtc-------agATTGAAACTCCAATACTCTCTAGATCTACTCCAGAAGGCGCGCGAGATTATCTGGTTCCGTCAAGAATTCAG

upper sequence: GLYMA08G04870.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 3'ss of exon 4
gtactattctgtgagttcatcacttaagtt-attttctctgttcattgagta-attgtgttgctttccttccactgttattactcactctgggttagtgtttgatatcc-tgtgttgatcttacctttttttggtcccaagatagATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG
||| ||| || ||   |  | | |  |||| |  ||||   ||||   | || ||| | | |  |||  |  |    ||||| |   | ||| ||  ||||| || | | |    |  | | | | |   ||  |   |   |||||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||||| || || |||||| | |||
gtattatcctttgcagttttaattacagttgaacttcttacttcaaatattatattttataggattcacttaa--aatattatttgtt-tggatttatgtttaattttcatactatattttgatcgtgactt--ttgtagagtagATTGAGACTCCAATACTCTCTAGATCTACTCCAGAGGGTGCTCGGGATTATTTGGTGCCCTCAAGAGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggttagtgtttgatatcctgtgttgatcttacctttttttggtcccaagatagATTGAAACTCCCATACTGTCAAGATCCACACCAGAAGGTGCCCGGGATTATTTAGTTCCATCAAGAATCCAG
                           atcttac  putative branch site (score: 3)
                                 cctttttttggtccc  CT-rich tract
                                   ttttttt  TA-rich tract